ChannelStat.java
package com.github.celldynamics.quimp.plugin.ana;
/**
* Hold statistic of fluorescence for one channel.
*
* @author p.baniukiewicz
*
*/
public class ChannelStat {
/**
* Area of inner contour - <b>scaled</b>.
*/
public double innerArea = -1;
/**
* Mean intensity in outer contour * outer contour area. This is <b>not scaled</b> to any unit.
*/
public double totalFluor = -1;
/**
* Scaled width of the cortex.
*/
public double cortexWidth = -1;
/**
* Mean intensity within outer contour.
*/
public double meanFluor = -1;
/**
* Mean intensity of inner contour.
*/
public double meanInnerFluor = -1;
/**
* Mean intensity within inner contour * <b>unscaled</b> area of inner contour.
*/
public double totalInnerFluor = -1;
/**
* Scaled outer area - scaled inner area.
*
* <p>Outer area is read from <tt>stQP</tt> file and it is computed by BOA on exit:
* ({@link com.github.celldynamics.quimp.Nest#analyse(ij.ImagePlus, boolean)} and then
* {@link com.github.celldynamics.quimp.CellStatsEval})
*/
public double cortexArea = -1;
/**
* Mean intensity in outer contour - mean intensity within inner contour.
*/
public double totalCorFluo = -1;
/**
* totalCorFluo / (outer contour area (not scaled) - inner contour area (not scaled)).
*/
public double meanCorFluo = -1;
/**
* totalCorFluo / totalFluor * 100.
*/
public double percCortexFluo = -1;
/**
* Default constructor. Does nothing.
*/
public ChannelStat() {
}
}