CellStats.java
package com.github.celldynamics.quimp;
import java.util.ArrayList;
import ij.measure.ResultsTable;
/**
* Keep statistics (outline and fluoro) for one cell along frames. This is format used by new QCONF
* file.
*
* @author p.baniukiewicz
*
*/
public class CellStats {
/**
* List of statistic calculated for subsequent frames for the same object.
*/
public ArrayList<FrameStatistics> framestat;
/**
* Return list of statistic calculated for subsequent frames for the same object.
*
* @return the framestat
*/
public ArrayList<FrameStatistics> getFramestat() {
return framestat;
}
/**
* Initialises empty container.
*/
public CellStats() {
framestat = new ArrayList<>();
}
/**
* Initialises container.
*
* @param framestat stats for subsequent frames for one cell
*/
public CellStats(ArrayList<FrameStatistics> framestat) {
this.framestat = framestat;
}
/**
* Get number of frames.
*
* @return the frames
*/
public int getNumStoredFrames() {
return framestat.size();
}
/**
* Add results stored in {@link FrameStatistics} object to ResultTable for all frames.
*
* @param rt table to fill
* @param channelno channel number
* @see FrameStatistics#addFluoToResultTable(ResultsTable, int)
*/
public void addFluosToResultTable(ResultsTable rt, int channelno) {
for (FrameStatistics fs : framestat) {
fs.addFluoToResultTable(rt, channelno);
}
}
/**
* Add statistics for all frames to table.
*
* @param rt IJ result table.
*/
public void addStatsToResultTable(ResultsTable rt) {
for (FrameStatistics fs : framestat) {
fs.addStatToResultTable(rt);
}
}
}