1 package com.github.celldynamics.quimp.filesystem;
2
3 import java.util.ArrayList;
4 import java.util.List;
5
6 import org.slf4j.Logger;
7 import org.slf4j.LoggerFactory;
8
9 import com.github.celldynamics.quimp.CellStats;
10 import com.github.celldynamics.quimp.CellStatsEval;
11
12 /**
13 * Keep statistics for cells.
14 *
15 * <p>This class is used as storage of frame statistics in
16 * {@link com.github.celldynamics.quimp.filesystem.DataContainer}.
17 *
18 * @author p.baniukiewicz
19 *
20 */
21 public class StatsCollection implements IQuimpSerialize {
22
23 /**
24 * The Constant LOGGER.
25 */
26 static final Logger LOGGER = LoggerFactory.getLogger(StatsCollection.class.getName());
27
28 /**
29 * List of statistic objects for separate cells.
30 */
31 public ArrayList<CellStats> sHs;
32
33 /**
34 * Create <tt>size</tt> elements in store for {@link CellStats} objects.
35 *
36 * <p>Size of the store usually equals to the number of cells in the image.
37 *
38 * @param size Number of cells
39 */
40 public StatsCollection(int size) {
41 sHs = new ArrayList<>(size);
42 }
43
44 /**
45 * Default constructor.
46 *
47 * <p>Create empty store for {@link CellStats} objects.
48 */
49 public StatsCollection() {
50 sHs = new ArrayList<>();
51 }
52
53 /*
54 * (non-Javadoc)
55 *
56 * @see com.github.celldynamics.quimp.IQuimpSerialize#beforeSerialize()
57 */
58 @Override
59 public void beforeSerialize() {
60 }
61
62 /*
63 * (non-Javadoc)
64 *
65 * @see com.github.celldynamics.quimp.IQuimpSerialize#afterSerialize()
66 */
67 @Override
68 public void afterSerialize() throws Exception {
69 }
70
71 /**
72 * Bridge method to maintain compatibility with old code. Copies statistics from CellStat
73 * objects into internal fields of StatsHandler.
74 *
75 * @param in List of CellStat objects - size of this list equals to number of cells. Each
76 * {@link CellStats} object maintain statistic for one cell along all frames.
77 */
78 public void copyFromCellStat(List<CellStatsEval> in) {
79 in.forEach(cl -> sHs.add(cl.getStatH()));
80 }
81
82 /**
83 * Get stats collection object wrapped by this class.
84 *
85 * @return the sHs
86 */
87 public ArrayList<CellStats> getStatCollection() {
88 return sHs;
89 }
90
91 /**
92 * Set stats collection object wrapped by this class.
93 *
94 * @param shs the sHs to set
95 */
96 public void setStatCollection(ArrayList<CellStats> shs) {
97 this.sHs = shs;
98 }
99
100 }