public class CellStatsEval extends Object implements ij.measure.Measurements
Stats are written on disk after calling constructor. Additionally there is separate list
maintained with the same data. They can be collected calling getStatH()
. This is due to
compatibility with old QuimP.
ADD_TO_OVERLAY, ALL_STATS, AREA, AREA_FRACTION, CENTER_OF_MASS, CENTROID, CIRCULARITY, ELLIPSE, FERET, INTEGRATED_DENSITY, INVERT_Y, KURTOSIS, LABELS, LIMIT, MAX_STANDARDS, MEAN, MEDIAN, MIN_MAX, MODE, NaN_EMPTY_CELLS, PERIMETER, RECT, SCIENTIFIC_NOTATION, SHAPE_DESCRIPTORS, SKEWNESS, SLICE, STACK_POSITION, STD_DEV
Constructor and Description |
---|
CellStatsEval(OutlineHandler oh,
ij.ImagePlus ip,
double s,
double fi)
Only create the object.
|
CellStatsEval(OutlineHandler oh,
ij.ImagePlus ip,
File f,
double s,
double fi)
Create and run the object.
|
Modifier and Type | Method and Description |
---|---|
CellStats |
getStatH()
Return statistics in new format for one cell along all frames it appears in.
|
public CellStatsEval(OutlineHandler oh, ij.ImagePlus ip, File f, double s, double fi)
After creating the object, file with stats is written and stats are available by calling
getStatH()
method.
oh
- OutlineHandlerip
- image associated with OutlineHandlerf
- file name to write stats, if null file is not createds
- image scalefi
- frame intervalpublic CellStatsEval(OutlineHandler oh, ij.ImagePlus ip, double s, double fi)
getStatH()
method.oh
- OutlineHandlerip
- image associated with OutlineHandlers
- image scalefi
- frame intervalpublic CellStats getStatH()
This is roughly the same as FrameStatistics[] computed by this class. New format is included
in QCONF file through StatsCollection
Copyright © 2002–2019 Department of Computer Science, Warwick University. All rights reserved.