public class Qp extends AbstractPluginOptions
Modifier and Type | Field and Description |
---|---|
double |
avgCov
The avg cov.
|
int |
channel
The channel.
|
String |
filename
The core of filename.
|
double |
fps
Frames per second.
|
double |
frameInterval
The frame interval.
|
int |
increment
The increment.
|
int |
mapRes
The map resolution.
|
File |
outFile
Full path to output file.
|
String |
outlinePlot
The outline plot.
|
String[] |
outlinePlots
The outline plots.
|
double |
scale
Pixel size in microns.
|
File |
snQPfile
snQP file.
|
File |
stQPfile
stQP file.
|
double |
sumCov
The sum cov.
|
String |
trackColor
The track color.
|
KEY, LOGGER, MAXITER, paramFile
Constructor and Description |
---|
Qp()
Instantiates a new qp.
|
Qp(File file)
Allow to add file name to options.
|
Modifier and Type | Method and Description |
---|---|
Object |
clone() |
void |
setup(QParams qp)
Copies selected data from QParams to this object.
|
afterSerialize, beforeSerialize, deserialize, deserialize2Macro, escapeJsonMacro, removeSpacesMacro, serialize, serialize2Macro, unescapeJsonMacro
public transient File snQPfile
public transient File stQPfile
public transient String filename
public transient double scale
public transient double frameInterval
public transient double fps
public transient int increment
public String trackColor
public transient String[] outlinePlots
public String outlinePlot
public double sumCov
public double avgCov
public int mapRes
public transient int channel
public Qp()
public Qp(File file)
For convenient creation of Q_Analysis
for API.
file
- file to addpublic void setup(QParams qp)
qp
- General QuimP parameters objectpublic Object clone() throws CloneNotSupportedException
clone
in class Object
CloneNotSupportedException
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