Package com.github.celldynamics.quimp.plugin.randomwalk

Random Walk solver and QuimP plugin.

See: Description

Class Summary

Class	Description
BinaryFilters	Provide sets of binary filters.
BinaryFilters.EmptyMorpho	Dummy filter that does nothing.
BinaryFilters.MedianMorpho	Perform median filtering with radius 2 on image.
BinaryFilters.SimpleMorpho	Filter image using 1 iteration opening.
ListMap<T>	Store objects (maps) under specified key.
Point	Basic class for storing point in Cartesian system.
ProbabilityMaps	Store probability maps computed for foreground and background objects.
PropagateSeeds	Generate new seeds for n+1 frame in stack using previous results of segmentation.
PropagateSeeds.Contour	Contain methods for propagating seeds to the next frame using contour shrinking operations.
PropagateSeeds.Dummy	Empty propagator.
PropagateSeeds.Morphological	Contain methods for propagating seeds to next frame using morphological operations.
RandomWalkModel	This class holds all possible RW parameters.
RandomWalkOptions	Hold algorithm parameters.
RandomWalkSegmentation	This is implementation of Matlab version of Random Walk segmentation algorithm.
RandomWalkSegmentationPlugin_	Run RandomWalkSegmentation in IJ environment.
RandomWalkView	UI for Random Walk algorithm.
SeedPicker	Simple seed picker by means of ROIs.
SeedProcessor	Contain various methods for converting labelled images to Seeds.
Seeds	Keep information about seeds for different Seed types.

Enum Summary

Enum	Description
BinaryFilters.Filters	Filters available in this class.
BinaryFilters.MorphoOperations	Available binary operations.
PropagateSeeds.Propagators	Seed propagators available in this class.
RandomWalkModel.SeedSource	Possible sources of seeds.
RandomWalkSegmentation.SeedTypes	Define foreground and background indexes enums with numerical indexes.

Exception Summary

Exception	Description
RandomWalkException	Exception class for Random Walker plugin.

Package com.github.celldynamics.quimp.plugin.randomwalk Description

Random Walk solver and QuimP plugin.

About

This plugin performs segmentation by Random Walk method.

Prerequisites

Depending on approach they can be:

1. Image to segment
2. Seed source

Macro support

Macro is supported.

Parameters

See RandomWalkModel and RandomWalkOptions and Macro Recorder.

API support

Supported, see test cases.

Author:

p.baniukiewicz