1 package com.github.celldynamics.quimp;
2
3 import java.util.ArrayList;
4
5 import ij.measure.ResultsTable;
6
7 /**
8 * Keep statistics (outline and fluoro) for one cell along frames. This is format used by new QCONF
9 * file.
10 *
11 * @author p.baniukiewicz
12 *
13 */
14 public class CellStats {
15
16 /**
17 * List of statistic calculated for subsequent frames for the same object.
18 */
19 public ArrayList<FrameStatistics> framestat;
20
21 /**
22 * Return list of statistic calculated for subsequent frames for the same object.
23 *
24 * @return the framestat
25 */
26 public ArrayList<FrameStatistics> getFramestat() {
27 return framestat;
28 }
29
30 /**
31 * Initialises empty container.
32 */
33 public CellStats() {
34 framestat = new ArrayList<>();
35 }
36
37 /**
38 * Initialises container.
39 *
40 * @param framestat stats for subsequent frames for one cell
41 */
42 public CellStats(ArrayList<FrameStatistics> framestat) {
43 this.framestat = framestat;
44 }
45
46 /**
47 * Get number of frames.
48 *
49 * @return the frames
50 */
51 public int getNumStoredFrames() {
52 return framestat.size();
53 }
54
55 /**
56 * Add results stored in {@link FrameStatistics} object to ResultTable for all frames.
57 *
58 * @param rt table to fill
59 * @param channelno channel number
60 * @see FrameStatistics#addFluoToResultTable(ResultsTable, int)
61 */
62 public void addFluosToResultTable(ResultsTable rt, int channelno) {
63 for (FrameStatistics fs : framestat) {
64 fs.addFluoToResultTable(rt, channelno);
65 }
66 }
67
68 /**
69 * Add statistics for all frames to table.
70 *
71 * @param rt IJ result table.
72 */
73 public void addStatsToResultTable(ResultsTable rt) {
74 for (FrameStatistics fs : framestat) {
75 fs.addStatToResultTable(rt);
76 }
77 }
78 }