package com.github.celldynamics.quimp.plugin.protanalysis;
   
   import java.awt.event.ActionEvent;
   
   import com.github.celldynamics.quimp.QParamsQconf;
   import com.github.celldynamics.quimp.filesystem.QconfLoader;
   import com.github.celldynamics.quimp.geom.MapCoordConverter;
   import com.github.celldynamics.quimp.plugin.protanalysis.Prot_Analysis.PointHashSet;
   import com.github.celldynamics.quimp.plugin.qanalysis.STmap;
  
  import ij.gui.PointRoi;
  import ij.gui.Roi;
  import ij.plugin.frame.RoiManager;
  
  /**
   * Action for ROI to/from transfer.
   * 
   * @author p.baniukiewicz
   *
   */
  @SuppressWarnings("serial")
  public class ActionToRoi extends ProtAnalysisAbstractAction {
  
    /**
     * Create action.
     * 
     * @param name name
     * @param desc tooltip
     * @param ui reference to manager
     */
    public ActionToRoi(String name, String desc, ProtAnalysisUi ui) {
      super(name, desc, ui);
    }
  
    /*
     * (non-Javadoc)
     * 
     * @see
     * com.github.celldynamics.quimp.plugin.protanalysis.ProtAnalysisAbstractAction#actionPerformed(
     * java.awt.event.ActionEvent)
     */
    @Override
    public void actionPerformed(ActionEvent e) {
      PointHashSet points = ui.getModel().selected;
      RoiManager rm = RoiManager.getRoiManager();
      rm.reset();
      QconfLoader qconfLoader = ui.getModel().getQconfLoader();
      STmap[] stMap = ((QParamsQconf) qconfLoader.getQp()).getLoadedDataContainer().getQState();
      int i = 0;
      for (PointCoords p : points) {
        int tmpIndex = MapCoordConverter.findPointIndex(stMap[p.cellNo].getxMap()[p.frame],
                stMap[p.cellNo].getyMap()[p.frame], p.point.getX(), p.point.getY(), Double.MAX_VALUE);
        Roi roi = new PointRoi(tmpIndex, (double) p.frame / (stMap[p.cellNo].getT() - 1)
                * stMap[p.cellNo].getVerticalResolution());
        roi.setName(ProtAnalysisOptions.roiPrefix + p.cellNo + "_" + i++);
        rm.addRoi(roi);
      }
  
    }
  
  }