public class ANAp extends Object
This class is serialized through
ANAParamCollection
.
The structure of transient and non-transient fields must be reflected in FormatConverter. Note
that there is similar class AnaOptions
which keeps parameters related to macros.
FormatConverter.doConversion()
,
AnaOptions
Modifier and Type | Field and Description |
---|---|
double |
angleTh
Angle threshold.
|
int |
endFrame
Frame range.
|
File[] |
fluTiffs
Array of fluorescent channels.
|
double |
frameInterval
Frame interval.
|
double |
freezeTh
Angle to freeze neighbouring vertexes.
|
File |
inFile
Input file reference.
|
double |
oneFrameRes
Frame resolution.
|
File |
outFile
Output snQP file reference (the same as
inFile . |
double |
scale
Image scale.
|
int |
startFrame
Frame range.
|
File |
statFile
Reference to Stats file.
|
double |
stepRes
Atomic step during contour shrinking.
|
Constructor and Description |
---|
ANAp()
Default constructor.
|
ANAp(ANAp src)
Copy constructor.
|
Modifier and Type | Method and Description |
---|---|
double |
getCortexWidthPixel()
Get cortex width in pixels.
|
double |
getCortexWidthScale()
Get cortex scale.
|
void |
setCortextWidthScale(double c)
Set cortex scale.
|
void |
setCortexWidthPixel(double cortexWidthPixel)
Set cortex widh in pixels.
|
public File[] fluTiffs
public transient File inFile
snQP file if run from paQP.
public transient File statFile
Used in QCONF/paQP.
public final transient double stepRes
public final transient double freezeTh
public final transient double angleTh
public final transient double oneFrameRes
public transient double scale
Initialised by setup(QParams)
from loaded QCONF/paQP.
public transient double frameInterval
Initialised by setup(QParams)
from loaded QCONF/paQP.
public transient int startFrame
Initialised by setup(QParams)
from loaded QCONF/paQP.
public transient int endFrame
Initialised by setup(QParams)
from loaded QCONF/paQP.
public ANAp()
public ANAp(ANAp src)
src
- source to copy frompublic void setCortextWidthScale(double c)
c
- the scalepublic double getCortexWidthPixel()
public double getCortexWidthScale()
public void setCortexWidthPixel(double cortexWidthPixel)
cortexWidthPixel
- the cortexWidthPixel to setCopyright © 2002–2019 Department of Computer Science, Warwick University. All rights reserved.