public class ChannelStat extends Object
Modifier and Type | Field and Description |
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double |
cortexArea
Scaled outer area - scaled inner area.
|
double |
cortexWidth
Scaled width of the cortex.
|
double |
innerArea
Area of inner contour - scaled.
|
double |
meanCorFluo
totalCorFluo / (outer contour area (not scaled) - inner contour area (not scaled)).
|
double |
meanFluor
Mean intensity within outer contour.
|
double |
meanInnerFluor
Mean intensity of inner contour.
|
double |
percCortexFluo
totalCorFluo / totalFluor * 100.
|
double |
totalCorFluo
Mean intensity in outer contour - mean intensity within inner contour.
|
double |
totalFluor
Mean intensity in outer contour * outer contour area.
|
double |
totalInnerFluor
Mean intensity within inner contour * unscaled area of inner contour.
|
Constructor and Description |
---|
ChannelStat()
Default constructor.
|
public double innerArea
public double totalFluor
public double cortexWidth
public double meanFluor
public double meanInnerFluor
public double totalInnerFluor
public double cortexArea
Outer area is read from stQP file and it is computed by BOA on exit:
(Nest.analyse(ij.ImagePlus, boolean)
and then
CellStatsEval
)
public double totalCorFluo
public double meanCorFluo
public double percCortexFluo
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