com.github.celldynamics.quimp.plugin.protanalysis

Class ProtStat

java.lang.Object

com.github.celldynamics.quimp.plugin.protanalysis.ProtStat

All Implemented Interfaces:

IQuimpSerialize

public class ProtStat
extends Object
implements IQuimpSerialize

Compute statistics for one cell.

Author:

p.baniukiewicz

Field Summary

Fields

Modifier and Type	Field and Description
com.github.celldynamics.quimp.plugin.protanalysis.ProtStat.CellStatistics	cellStatistics Hold cell shape based statistics.
com.github.celldynamics.quimp.plugin.protanalysis.ProtStat.ProtrusionStatistics	protStatistics Hold protrusion statistics.

Constructor Summary

Constructors

Constructor and Description
ProtStat(MaximaFinder mf, TrackCollection tc, CellStats cs, STmap maps) Construct the object using various data containers.

Method Summary

Modifier and Type	Method and Description
void	afterSerialize() This method is called after restoring object from JSON but before returning the object.
void	beforeSerialize() This method is called just before JSON is generated.
void	writeCell(PrintWriter bf, int cellno) Add stats for this cell to output.
void	writeProtrusion(PrintWriter bf, int cellno) Write stats for protrusions for this cell.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

cellStatistics

public com.github.celldynamics.quimp.plugin.protanalysis.ProtStat.CellStatistics cellStatistics

Hold cell shape based statistics.

protStatistics

public com.github.celldynamics.quimp.plugin.protanalysis.ProtStat.ProtrusionStatistics protStatistics

Hold protrusion statistics.

Constructor Detail

ProtStat

public ProtStat(MaximaFinder mf,
                TrackCollection tc,
                CellStats cs,
                STmap maps)

Construct the object using various data containers.

Parameters:

mf - MaximaFinder

tc - TrackCollection

cs - CellStats

maps - STmap

Method Detail

writeCell

public void writeCell(PrintWriter bf,
                      int cellno)

Add stats for this cell to output.

Parameters:

bf - place to write

cellno - Cell number

writeProtrusion

public void writeProtrusion(PrintWriter bf,
                            int cellno)

Write stats for protrusions for this cell.

Parameters:

bf - place to write

cellno - Cell number.

beforeSerialize

public void beforeSerialize()

Description copied from interface: IQuimpSerialize

This method is called just before JSON is generated.

Specified by:

beforeSerialize in interface IQuimpSerialize

See Also:

Serializer.save(String)

afterSerialize

public void afterSerialize()
                    throws Exception

Description copied from interface: IQuimpSerialize

This method is called after restoring object from JSON but before returning the object.

Specified by:

afterSerialize in interface IQuimpSerialize

Throws:

Exception - from wrapped object in any problem. This is implementation dependent

See Also:

Serializer.load(String)