Package com.github.celldynamics.quimp.plugin.protanalysis

Demo of node tracking.

See: Description

Class Summary

Class	Description
ActionClearOverlay	Action for clear overlay button.
ActionClearPoints	Action for clear button.
ActionClickPredefinedPoint	Set mode for CustomCanvas to get reference point only.
ActionFromRoi	Action for ROI to/from transfer.
ActionGetPredefinedPoint	Update reference point from predefined settings.
ActionNotSupported	Deprecated
ActionPlot2d	Plot selected 2d data.
ActionPlotMap	Plot selected map.
ActionPolarPlot	Action for generating polar plots for selected point.
ActionRoiPredefinedPoint	Get reference point from current roi.
ActionSaveTracks	Action (referenced as ActionListener) for saving tracks to csv if "Track" button is hit.
ActionTableFluo	Create table with fluorescence features for selected cell and channel.
ActionTableGeom	Create table with geometric features for selected cell.
ActionToRoi	Action for ROI to/from transfer.
ActionTrackPoints	Generalisation of action for tracking points.
ActionUpdateOptionsBoolean	Create action for updating booleans in options from JCheckboxes.
ActionUpdateOptionsEnum	Action to set Enum based types.
ActionUpdateOptionsNumber	Create action for updating numbers in options from JComboBox<>.
ActionUpdateOptionsRadio	Update option from Radio Button (grouped).
MaximaFinder	Calculate maxima for image.
Prot_Analysis	Main class for Protrusion Analysis module.
ProtAnalysisAbstractAction	Abstract actions for Prot_Analysis UI.
ProtAnalysisOptions	Hold all configuration for Protrusion Analysis Module.
ProtStat	Compute statistics for one cell.
TrackCollection	Represent collection of tracks.
TrackMapAnalyser	Track point using tracking map generated by MapTracker.
TrackVisualisation	Support various methods of visualising protrusion data.

Enum Summary

Enum	Description
ProtAnalysisOptions.GradientType	Types of gradient points.
ProtAnalysisOptions.OutlinePlotTypes	Plot types supported by TrackVisualisation.Stack.addOutlinesToImage(STmap, ProtAnalysisOptions).

Package com.github.celldynamics.quimp.plugin.protanalysis Description

Demo of node tracking.

About

This plugin performs basic protrusion analysis and visualisation.

Prerequisites

QCONF file with ECMM, ANA and QAnalysis run.

Macro support

Macro is not supported/tested. See ProtAnalysisOptions

Parameters

API support

Supported, see test cases and:

1. ActionTrackPoints for plotting tracks
2. ActionSaveTracks for basic tracking
3. ActionPlotMap - for showing maps

Author:

p.baniukiewicz